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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79696040_79697359_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79696040 - 79697359
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
GCCTATTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTGTCTGAATT
Flanking Amino Acid:
LRFLGVTYRKLDADNYETDP
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
38.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
79.5
0.66
0.9
76.1
37.5
Minor 5ss
39.3
-1.2
3.3
51.6
39.4
Minor BPS
63.3
0.5
1.5
78.66
37.9

Associated Gene:

Gene:
ADI1
Ensembl Gene ID:
ENSAPLG00000001901
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026318
79695920 - 79700653
4734