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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79709444_79710015_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79709444 - 79710015
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATGAACT
5'SS Class:
major
3'SS Sequence:
TTCCCCCAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTATCTTACTT
Flanking Amino Acid:
HESVLFNLTTIILTTRPLYV
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
72.8
35.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
68.4
0.41
0.9
67.4
32.8
Minor 5ss
44.6
-0.6
2.9
63.7
40.5
Minor BPS
60.8
0.42
1.6
76.87
40

Associated Gene:

Gene:
TRAPPC12
Ensembl Gene ID:
ENSAPLG00000000576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026143
79709353 - 79762895
53543