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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79710150_79711494_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79710150 - 79711494
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATCTC
5'SS Class:
major
3'SS Sequence:
ATTTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATGATA
Flanking Amino Acid:
ILRIDSSNAVANNNAAVCLL
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
71.3
38.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85
0.79
0.7
78.4
35.5
Minor 5ss
38.3
-1.3
3.1
49.9
40.8
Minor BPS
53.3
0.1
1.5
66.87
33.2

Associated Gene:

Gene:
TRAPPC12
Ensembl Gene ID:
ENSAPLG00000000576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035481
79709907 - 79763036
53130
ENSAPLT00000026143
79709353 - 79762895
53543
ENSAPLT00000022547
79709802 - 79763036
53235
ENSAPLT00000000839
79709907 - 79762900
52994