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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79711583_79712380_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79711583 - 79712380
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTACTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TGTCACTTACTT
Flanking Amino Acid:
LQSQIMVLMNRAFLHLGQNN
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
75.2
0.57
0.9
66.4
39.8
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
55.8
0.26
1.8
75.41
41.1

Associated Gene:

Gene:
TRAPPC12
Ensembl Gene ID:
ENSAPLG00000000576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035481
79709907 - 79763036
53130
ENSAPLT00000026143
79709353 - 79762895
53543
ENSAPLT00000022547
79709802 - 79763036
53235
ENSAPLT00000000839
79709907 - 79762900
52994