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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79715747_79722902_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79715747 - 79722902
Intron Length:
7156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGCGCTTAAGT
Flanking Amino Acid:
SMANCLLMMKDYVLAVDAYH
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.4
0.62
0.8
74.2
30.5
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
49.8
0.06
2.1
68.78
47.9

Associated Gene:

Gene:
TRAPPC12
Ensembl Gene ID:
ENSAPLG00000000576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026143
79709353 - 79762895
53543
ENSAPLT00000022547
79709802 - 79763036
53235