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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79715747_79733919_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79715747 - 79733919
Intron Length:
18173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACT
5'SS Class:
major
3'SS Sequence:
TTTCACCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGCGCTTAAGT
Flanking Amino Acid:
LHSMKIICAKDYVLAVDAYH
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
78.1
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.4
0.62
0.8
74.2
30.5
Minor 5ss
41.7
-0.9
2.9
59.3
44.8
Minor BPS
49.8
0.06
2.1
68.78
47.9

Associated Gene:

Gene:
TRAPPC12
Ensembl Gene ID:
ENSAPLG00000000576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000839
79709907 - 79762900
52994