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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79722977_79726691_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79722977 - 79726691
Intron Length:
3715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTGCTCTTATTT
Flanking Amino Acid:
MTNITQENRQASVQLWRSRL
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
89
0.88
0.7
84.2
30.3
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
54.5
0.22
1.6
68.34
43.3

Associated Gene:

Gene:
TRAPPC12
Ensembl Gene ID:
ENSAPLG00000000576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026143
79709353 - 79762895
53543
ENSAPLT00000022547
79709802 - 79763036
53235
ENSAPLT00000035481
79709907 - 79763036
53130