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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7973275_7973819_R

Intron Information:

Intron Rank:
148012
Intron Class:
major
Intron Phase:
Intron Coordinates:
7973275 - 7973819
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAATAAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
73.9
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
35.7
-1.6
3.1
50.5
45.6
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045218
7967686 - 7973952
6267