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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79750611_79751403_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79750611 - 79751403
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TAATCATTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAT
Flanking Amino Acid:
PTNHTTDSLQLWFVRLALLV
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
29.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.8
0.54
0.9
71
39.4
Minor 5ss
46.6
-0.4
2.4
59.3
45.3
Minor BPS
72.6
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
TRAPPC12
Ensembl Gene ID:
ENSAPLG00000000576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035481
79709907 - 79763036
53130
ENSAPLT00000026143
79709353 - 79762895
53543
ENSAPLT00000022547
79709802 - 79763036
53235
ENSAPLT00000000839
79709907 - 79762900
52994