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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79757612_79761683_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
79757612 - 79761683
Intron Length:
4072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CATGGACACCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CTTCCATGGACA
Flanking Amino Acid:
MPGLKFDNIQGDAVKDLMLR
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
47.5
-0.1
1.1
38.7
38.2
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
50.1
-0
1.8
66.29
39.6

Associated Gene:

Gene:
TRAPPC12
Ensembl Gene ID:
ENSAPLG00000000576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022547
79709802 - 79763036
53235
ENSAPLT00000000839
79709907 - 79762900
52994
ENSAPLT00000035481
79709907 - 79763036
53130
ENSAPLT00000026143
79709353 - 79762895
53543