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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79763529_79775097_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79763529 - 79775097
Intron Length:
11569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGCC
5'SS Class:
major
3'SS Sequence:
TCTCTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACTTTTCTAATG
Flanking Amino Acid:
APVIYGLEFQARALTPQTAE
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
62.1
38.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.2
0.66
0.7
73.1
31.8
Minor 5ss
30.8
-2.2
3.5
41.3
45.5
Minor BPS
51.6
-0
1.7
57.33
39.2

Associated Gene:

Gene:
EIPR1
Ensembl Gene ID:
ENSAPLG00000016100
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045778
79762904 - 79838129
75226