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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79774563_79775097_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79774563 - 79775097
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACTTTTCTAATG
Flanking Amino Acid:
MARALTPQTAE
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
78.3
30.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.2
0.66
0.7
73.1
31.8
Minor 5ss
34.5
-1.8
2.8
38.6
41.7
Minor BPS
51.6
-0
1.7
57.33
39.2

Associated Gene:

Gene:
EIPR1
Ensembl Gene ID:
ENSAPLG00000016100
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016819
79774247 - 79836098
61852