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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79775182_79779058_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79775182 - 79779058
Intron Length:
3877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
GTQSLRYDNQIHIIDFDDEN
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.8
0.69
0.9
74.3
39.9
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
EIPR1
Ensembl Gene ID:
ENSAPLG00000016100
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016819
79774247 - 79836098
61852
ENSAPLT00000045778
79762904 - 79838129
75226