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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79824352_79835923_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79824352 - 79835923
Intron Length:
11572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGAAGT
5'SS Class:
major
3'SS Sequence:
TTTTTAATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
SDQEDQHQEEKIKEPLQDSV
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
70.9
39.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.5
0.78
0.8
83.2
32
Minor 5ss
43
-0.8
2.9
58
40.7
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
EIPR1
Ensembl Gene ID:
ENSAPLG00000016100
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045778
79762904 - 79838129
75226