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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79943271_79944989_R

Intron Information:

Intron Rank:
140775
Intron Class:
major
Intron Phase:
Intron Coordinates:
79943271 - 79944989
Intron Length:
1719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTGTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.6
36.7
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
88.6
0.87
0.7
83.7
31.3
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
70.7
0.64
1.6
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023115
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035475
79942370 - 79949231
6862