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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_79945061_79949078_R

Intron Information:

Intron Rank:
140776
Intron Class:
major
Intron Phase:
Intron Coordinates:
79945061 - 79949078
Intron Length:
4018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGTTCTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.2
0.55
0.9
68.1
37
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
51.8
-0
1.8
62.82
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023115
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035475
79942370 - 79949231
6862