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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7997969_8009592_R

Intron Information:

Intron Rank:
149071
Intron Class:
major
Intron Phase:
Intron Coordinates:
7997969 - 8009592
Intron Length:
11624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
67
0.38
0.7
60.8
22.1
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
61.4
0.43
2
87.17
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027694
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033256
7997452 - 8009746
12295