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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8026692_8034072_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8026692 - 8034072
Intron Length:
7381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTGTTTTAACT
Flanking Amino Acid:
GQQQIPKLLSNLRPQDTWRG
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.3
0.68
0.8
75
29.9
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
72.1
0.77
1.3
82.56
39.6

Associated Gene:

Gene:
XRN2
Ensembl Gene ID:
ENSAPLG00000013869
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014515
8016697 - 8063286
46590