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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8038242_8040155_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8038242 - 8040155
Intron Length:
1914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTCTTTACCA
Flanking Amino Acid:
TLNENAVLPDQTVESPVPML
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.9
0.83
0.8
81.9
34.5
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
77.3
0.85
1.5
86.93
31.8

Associated Gene:

Gene:
XRN2
Ensembl Gene ID:
ENSAPLG00000013869
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014515
8016697 - 8063286
46590