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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80397397_80402063_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80397397 - 80402063
Intron Length:
4667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTAAATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATTCACTTGACA
Flanking Amino Acid:
GHVKKPYYGKDPSRTEKKES
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.2
0.46
1
63.4
41.7
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
66.6
0.52
1.5
75.82
34.3

Associated Gene:

Gene:
MYT1L
Ensembl Gene ID:
ENSAPLG00000016052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046513
80379389 - 80478407
99019
ENSAPLT00000018891
80396419 - 80478747
82329
ENSAPLT00000016746
80379389 - 80478407
99019