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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8040236_8040325_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8040236 - 8040325
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTCTTCCATA
Flanking Amino Acid:
VEQYKSKNTEPVDIPPELCH
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78
0.63
0.7
73.5
30.9
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
52.3
0.07
1.9
69.6
37.3

Associated Gene:

Gene:
XRN2
Ensembl Gene ID:
ENSAPLG00000013869
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014515
8016697 - 8063286
46590