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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80410621_80416487_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80410621 - 80416487
Intron Length:
5867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTTCTTTTGAGT
Flanking Amino Acid:
SRDISPKGYDAKRYCKNSSP
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
62.5
42.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
85.2
0.79
0.7
80.5
25
Minor 5ss
30.9
-2.2
3.7
43.8
45.8
Minor BPS
54.6
0.22
1.6
72.48
38.7

Associated Gene:

Gene:
MYT1L
Ensembl Gene ID:
ENSAPLG00000016052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046513
80379389 - 80478407
99019
ENSAPLT00000018891
80396419 - 80478747
82329
ENSAPLT00000016746
80379389 - 80478407
99019