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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80416736_80418797_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80416736 - 80418797
Intron Length:
2062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
CTTATTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
STKPQDLCARNPDMEVDENG
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
74.1
36.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.6
0.69
0.9
76.8
36
Minor 5ss
36
-1.6
3.1
40.7
45.3
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
MYT1L
Ensembl Gene ID:
ENSAPLG00000016052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016746
80379389 - 80478407
99019
ENSAPLT00000046513
80379389 - 80478407
99019
ENSAPLT00000018891
80396419 - 80478747
82329