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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80452603_80454063_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80452603 - 80454063
Intron Length:
1461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGCTATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTATCTCATCT
Flanking Amino Acid:
KEDKEDQEPIRCPVPGCDGQ
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
71.7
0.49
1
62.6
42.9
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
57.6
0.32
1.9
80.79
40.8

Associated Gene:

Gene:
MYT1L
Ensembl Gene ID:
ENSAPLG00000016052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046513
80379389 - 80478407
99019
ENSAPLT00000018891
80396419 - 80478747
82329
ENSAPLT00000016746
80379389 - 80478407
99019