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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8045380_8048711_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8045380 - 8048711
Intron Length:
3332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGCCA
5'SS Class:
major
3'SS Sequence:
ATTTATTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATTA
Flanking Amino Acid:
DSEPEPEDNIRLWETGWKQR
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
61.7
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75
0.56
1
69.6
39.9
Minor 5ss
24.9
-2.9
3.1
30.5
42.8
Minor BPS
55.9
0.18
1.7
68.94
37.7

Associated Gene:

Gene:
XRN2
Ensembl Gene ID:
ENSAPLG00000013869
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014515
8016697 - 8063286
46590