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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80454286_80472349_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80454286 - 80472349
Intron Length:
18064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTACTATTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TCGAAATTAACA
Flanking Amino Acid:
HVSGSFLTHRSLSGCPRATS
Intron Amino Acid Position:
888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
78.3
0.64
0.9
72.8
36.3
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
50.4
0.01
1.9
62.46
43.2

Associated Gene:

Gene:
MYT1L
Ensembl Gene ID:
ENSAPLG00000016052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016746
80379389 - 80478407
99019
ENSAPLT00000046513
80379389 - 80478407
99019
ENSAPLT00000018891
80396419 - 80478747
82329