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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8050809_8051987_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8050809 - 8051987
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATTT
Flanking Amino Acid:
RQKEKKKRMKRDHPAFIPGG
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.6
0.76
0.8
82
34.8
Minor 5ss
38.9
-1.2
2.9
49.9
46.3
Minor BPS
53.1
0.18
1.7
70.85
40.8

Associated Gene:

Gene:
XRN2
Ensembl Gene ID:
ENSAPLG00000013869
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014515
8016697 - 8063286
46590