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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8053363_8053526_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8053363 - 8053526
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACACA
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAATGTCAAGT
Flanking Amino Acid:
FLPHLPSLEIREGAIDRLVN
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
66.6
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.9
0.74
0.8
81.2
36.5
Minor 5ss
45.1
-0.5
2.6
58.4
45.9
Minor BPS
41.2
-0.5
2.3
58.67
44

Associated Gene:

Gene:
XRN2
Ensembl Gene ID:
ENSAPLG00000013869
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014515
8016697 - 8063286
46590