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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80538294_80541301_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
80538294 - 80541301
Intron Length:
3008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTTTTCTTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
87.9
0.85
0.7
83.3
25.1
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
68.5
0.58
1.7
78.35
38.8

Associated Gene:

Gene:
PXDN
Ensembl Gene ID:
ENSAPLG00000015757
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016459
80536161 - 80579159
42999