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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80541472_80541968_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80541472 - 80541968
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATTTTCTCACA
Flanking Amino Acid:
EVTLRYFGSPARPSFVIHPQ
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.4
0.8
0.7
80.4
31.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
49.3
-0
2
68.47
38

Associated Gene:

Gene:
PXDN
Ensembl Gene ID:
ENSAPLG00000015757
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016459
80536161 - 80579159
42999