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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80543710_80544873_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80543710 - 80544873
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
ACTGCTGTAAAG
Flanking Amino Acid:
PQPVIAWTKGGGQLSVDRRH
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
79
0.65
0.9
75.9
38
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
44.7
-0.5
2.2
50.14
44.3

Associated Gene:

Gene:
PXDN
Ensembl Gene ID:
ENSAPLG00000015757
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016459
80536161 - 80579159
42999