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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80545033_80547491_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80545033 - 80547491
Intron Length:
2459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATACCT
Flanking Amino Acid:
IVVYLTVQPRVTPVFASVPS
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89.3
0.88
0.7
88.9
28.2
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
59.6
0.38
1.9
81.79
39.5

Associated Gene:

Gene:
PXDN
Ensembl Gene ID:
ENSAPLG00000015757
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016459
80536161 - 80579159
42999