Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80547605_80548454_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80547605 - 80548454

Intron Length:

850

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATAGAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTACTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAC

U12 Branch Point Sequence:

TGTTCTTTACTG

Flanking Amino Acid:

EPEPVITWNKDGVQVTESGK

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

31.4

Major BPS

0.6

65.6

41.1

Major PPT

86.2

0.82

0.7

81.8

28.6

Minor 5ss

32.2

-2

3.5

47.2

48.2

Minor BPS

63.1

0.27

1.7

67.55

40.8

Associated Gene:

Gene:

PXDN

Ensembl Gene ID:

ENSAPLG00000015757

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016459

80536161 - 80579159

42999