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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8054935_8055866_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8054935 - 8055866
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
AAATCTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TTTACCTAATCT
Flanking Amino Acid:
NSDPGWKNLTVILSDASAPG
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
71.9
0.49
0.9
65.2
40.1
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
61.6
0.44
2
84.72
41.8

Associated Gene:

Gene:
XRN2
Ensembl Gene ID:
ENSAPLG00000013869
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014515
8016697 - 8063286
46590