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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80551862_80552302_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
80551862 - 80552302
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCCCT
5'SS Class:
weak_major
3'SS Sequence:
AATTATCTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTTTTCCAAATT
Flanking Amino Acid:
INSTRTHLFDSRPRSPNDLL
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
58.9
45.7
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
66.5
0.37
1
64.7
41.3
Minor 5ss
57.6
0.26
2.4
75.2
40.6
Minor BPS
59.2
0.37
2
83.92
37.4

Associated Gene:

Gene:
PXDN
Ensembl Gene ID:
ENSAPLG00000015757
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016459
80536161 - 80579159
42999