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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80556523_80557383_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80556523 - 80557383
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGATACTAAATC
Flanking Amino Acid:
KNPEIREKLSRLYGSPLNID
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
86.3
0.82
0.7
85.3
28.9
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
53.9
0.1
1.8
65.11
40.3

Associated Gene:

Gene:
PXDN
Ensembl Gene ID:
ENSAPLG00000015757
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016459
80536161 - 80579159
42999