Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8057295_8058503_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8057295 - 8058503

Intron Length:

1209

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TGGTACCTGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAA

U12 Branch Point Sequence:

GATGCAATAACT

Flanking Amino Acid:

RLLYMAIDGVAPRAKMNQQR

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

86.4

28.9

Major BPS

65.6

0.39

0.9

55.4

32.7

Major PPT

60.8

0.24

1.1

59.2

42.6

Minor 5ss

43.5

-0.7

2.9

62.1

37.1

Minor BPS

50.4

0.09

72.69

43.2

Associated Gene:

Gene:

XRN2

Ensembl Gene ID:

ENSAPLG00000013869

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014515

8016697 - 8063286

46590