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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80643462_80660082_F

Intron Information:

Intron Rank:
134781
Intron Class:
major
Intron Phase:
Intron Coordinates:
80643462 - 80660082
Intron Length:
16621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACCT
5'SS Class:
strong_major
3'SS Sequence:
AAAATCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TCTTTCAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
70.8
39.3
Major BPS
79
0.72
1
80.3
31.7
Major PPT
67
0.38
1
55.7
44.5
Minor 5ss
40.7
-1
3.1
57.7
46.5
Minor BPS
49.3
0.03
2
73.49
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022489
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042244
80642915 - 80660580
17666