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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80702753_80706061_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80702753 - 80706061
Intron Length:
3309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATATCTC
5'SS Class:
major
3'SS Sequence:
ATTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTATAATGATT
Flanking Amino Acid:
GWNFQAPVCIDINECENEIN
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
71.2
38.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
86.8
0.83
0.8
81.4
35.3
Minor 5ss
44.2
-0.6
2.9
61.5
43.4
Minor BPS
48
-0
1.9
73.6
37

Associated Gene:

Gene:
TPO
Ensembl Gene ID:
ENSAPLG00000015727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016400
80702432 - 80744617
42186