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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80707013_80711053_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80707013 - 80711053
Intron Length:
4041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCAACCTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATCTCTTCAAAA
Flanking Amino Acid:
KQMKALRDGDRFWWENDNVF
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.1
37.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.1
0.56
0.9
65.5
40.7
Minor 5ss
42.4
-0.8
2.9
59.1
45.4
Minor BPS
57.9
0.24
1.6
67.25
39.1

Associated Gene:

Gene:
TPO
Ensembl Gene ID:
ENSAPLG00000015727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016400
80702432 - 80744617
42186