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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80712747_80713309_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80712747 - 80713309
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
FFSPWRLIKEGGLDPLLRGL
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.4
0.55
1.1
74.5
39.3
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
TPO
Ensembl Gene ID:
ENSAPLG00000015727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016400
80702432 - 80744617
42186