About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80722425_80727808_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80722425 - 80727808
Intron Length:
5384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTTTTGTTACAC
Flanking Amino Acid:
EKQNPCFPIKVTANDTLSTG
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
80.8
0.69
0.9
76.6
36.7
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
49
-0
2.3
70.75
40.8

Associated Gene:

Gene:
TPO
Ensembl Gene ID:
ENSAPLG00000015727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016400
80702432 - 80744617
42186