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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80735747_80736243_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80735747 - 80736243
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAAAT
U12 Branch Point Sequence:
TCTTCCTTACAG
Flanking Amino Acid:
QKHKRSLHPTDLLSADLLTM
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
53.3
0.08
1.1
59
36
Major PPT
89.3
0.88
0.6
84
24.2
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
62.7
0.26
1.8
68.4
44.9

Associated Gene:

Gene:
TPO
Ensembl Gene ID:
ENSAPLG00000015727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016400
80702432 - 80744617
42186