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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80736414_80741603_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80736414 - 80741603
Intron Length:
5190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCAATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTCAATT
Flanking Amino Acid:
VDYAAQYTLKRSIQGKEIST
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.2
0.54
0.9
67.5
37.4
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
62.7
0.48
1.5
80.28
35.9

Associated Gene:

Gene:
TPO
Ensembl Gene ID:
ENSAPLG00000015727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016400
80702432 - 80744617
42186