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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8075367_8078005_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8075367 - 8078005
Intron Length:
2639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
GTATTTCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
CTTTTTCTACCA
Flanking Amino Acid:
SSSERSGDLSSKIILWLSGD
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
79.9
0.67
0.9
73.4
37
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
49.5
-0
1.9
66.77
40.3

Associated Gene:

Gene:
KIZ
Ensembl Gene ID:
ENSAPLG00000013782
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028496
8074785 - 8115336
40552