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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80771474_80786150_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80771474 - 80786150
Intron Length:
14677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTCTCTTGCTT
Flanking Amino Acid:
NLDTKQIETKELEFQDLTAV
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
71.6
0.54
1
72
33.1
Major PPT
86.8
0.83
0.7
84.4
23.4
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
46.1
-0.2
3.4
79.75
36.6

Associated Gene:

Gene:
SNTG2
Ensembl Gene ID:
ENSAPLG00000015579
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016246
80771342 - 80932375
161034