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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80790676_80806397_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80790676 - 80806397
Intron Length:
15722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTGTTTTTGTTT
Flanking Amino Acid:
AIFLEVQRTGSKTYMCSWQG
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87.1
0.84
0.8
80.5
37
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
44
-0.3
3.4
73.17
39

Associated Gene:

Gene:
SNTG2
Ensembl Gene ID:
ENSAPLG00000015579
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016246
80771342 - 80932375
161034