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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80810724_80819493_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80810724 - 80819493
Intron Length:
8770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TTTGATATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTTCTTAATA
Flanking Amino Acid:
SSFYIFSTPPVSTLDWVRAE
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.6
34.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.3
0.59
0.9
70.2
39.9
Minor 5ss
32.6
-2
3
40.7
45.3
Minor BPS
80.8
0.96
1
82.55
32.7

Associated Gene:

Gene:
SNTG2
Ensembl Gene ID:
ENSAPLG00000015579
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016246
80771342 - 80932375
161034