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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80839665_80847315_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80839665 - 80847315
Intron Length:
7651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTAC
5'SS Class:
major
3'SS Sequence:
CTCTATTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATAACTC
Flanking Amino Acid:
TNISDLTLQNMKMANKCCSP
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
73.1
32
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.3
0.59
0.8
71.7
32.5
Minor 5ss
49
-0.1
2.4
65.2
39.7
Minor BPS
42.7
-0.5
2.2
57.56
41.2

Associated Gene:

Gene:
SNTG2
Ensembl Gene ID:
ENSAPLG00000015579
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016246
80771342 - 80932375
161034