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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80847446_80861076_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80847446 - 80861076
Intron Length:
13631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAAT
5'SS Class:
major
3'SS Sequence:
CTTCTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTCCTTTACG
Flanking Amino Acid:
SRYKAGTDKLRSNAFEVLAL
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
80.8
32.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
83
0.74
0.8
77.8
29.4
Minor 5ss
39.8
-1.1
2.5
51.4
45.2
Minor BPS
73
0.58
1.7
75.67
42.1

Associated Gene:

Gene:
SNTG2
Ensembl Gene ID:
ENSAPLG00000015579
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016246
80771342 - 80932375
161034